Not necessarily. The police don't automatically have access to everything when they kick down a door. The warrant needs to state explicitly what they're after.
If the data specified by the warrant is suddenly and intentionally encrypted then they still have to provide that data or argue the obstruction angle in front of a judge. Just because a company is incorporated doesn't mean they lose all rights.
So warrant say "Uber should hand over data about transfers in/out from the companies bank account" and Uber can then hand them over a password protected CSV and say "You didn't ask for data you could read" and the police should just be like "Hah, you got us! We'll come back with another one!"?